Welcome to polyCat

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About PolyCat Read mapping is a fundamental part of next-generation genomic research and is complicated by genome duplication of many plants. This implementation of PolyCat is a pipeline for mapping and A/D genome read categorization of next-generation Gossypium sequence data including whole genome shotgun, RNA-seq, and bisulfite-treated reads. It currently utilizes SNP index version 2.0.

Important information PolyCat is a free, public, internet accessible resource being offered "as is" for gzip compressed fastq data, having a maximum compressed file size of 1GB. Data transfer and storage are NOT encrypted. It is based on the PolyCat pipeline that is available under an open software license. Setting up your own local pipeline may be more appropriate if there are restrictions on the way in which your research data can be stored and used or for larger datasets.